Patient Event Sequencing: Single Site, Exploratory, Cross-Sectional Analysis
| dc.contributor | Patient-Centered Outcomes Research Institute |
| dc.contributor.author | PEDSnet Data Coordinating Center |
| dc.contributor.other | PEDSnet Data Coordinating Center |
| dc.date.accessioned | 2025-01-14T15:48:06Z |
| dc.date.created | 2024-12-17 |
| dc.description.abstract | The Patient Event Sequencing module computes the days between two user-specified events and summarizes the distribution within the cohort. It assesses the plausibility of the sequence of two user-provided clinical events as they appear in a patient's record. This allows the user to ensure that the two events, like a cancer diagnosis and chemotherapy, occur in a sensible order and within an expected length of time. |
| dc.identifier.uri | https://hdl.handle.net/20.500.14642/954 |
| dc.identifier.uri | https://doi.org/10.24373/pdsp-409 |
| dc.publisher | PEDSnet |
| dc.relation.uri | https://github.com/ssdqa/patienteventsequencing |
| dc.rights | a CC-BY Attribution 4.0 License. |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0 |
| dc.subject | Single Site Analysis |
| dc.subject | Exploratory Analysis |
| dc.subject | Cross-Sectional Analysis |
| dc.title | Patient Event Sequencing: Single Site, Exploratory, Cross-Sectional Analysis |
| dspace.entity.type | DQCheck |
| local.code.package | # install.packages("devtools") devtools::install_github('ssdqa/patienteventsequencing') |
| local.description.raw | This check produces a raw data output containing 8 columns of data: <br> |Column |Data Type|Definition | |----------------|---------|----------------------------------------------------------------------------------------------------------------------------| |`site` |character|the name of the site being targeted OR ""combined"" if multiple sites were provided | |`num_days` |numeric |the number of days between event A and event B, using the date of event A as the index | |`user_cutoff` |numeric |the user provided threshold for days between the events | |`event_a_name` |character|the name of event A | |`event_b_name` |character|the name of event B | |`pt_ct` |numeric |the number of patients with num_days between the two events | |`total_pts` |numeric |the total number of patients in the cohort | |`pts_without_both`|numeric |the number of patients that are missing one of or both of the events, which prevents a date differential from being computed| {.dqcheck-table} |
| local.description.viz | This check outputs two graphs: 1. A histogram displaying the distribution of days between events for the cohort, with a single bar graph (patchworked together with the histogram) displaying the proportion of patients who did not have Event B at all. The binsize (bar width) is automatically determined by the geom_histogram function. 2. A bar graph displaying the proportion of patients whose time between events falls within each threshold window: 30, 60, 90, and 365 days, plus a user provided threshold. These are NOT currently mutually exclusive, meaning the year bar also contains patients from all the other bars. |
| local.dqcheck.category | Plausibility |
| local.dqcheck.clinicalprobe | Clinical Follow-Up |
| local.dqcheck.clinicalprobe | Utilization Patterns |
| local.dqcheck.measurement | Time Between Events |
| local.dqcheck.probe | Selection Error or Bias |
| local.dqcheck.probe | Temporality Consistency Check |
| local.dqcheck.requirement | cohort |
| local.dqcheck.requirement | n_event_a |
| local.dqcheck.requirement | n_event_b |
| local.dqcheck.requirement | pes_event_file |
| local.dqcheck.requirement | omop_or_pcornet |
| local.dqcheck.requirement | multi_or_single_site |
| local.dqcheck.requirement | anomaly_or_exploratory |
| local.dqcheck.requirement | age_groups |
| local.dqcheck.requirement | patient_level_tbl |
| local.dqcheck.requirement | p_value |
| local.dqcheck.requirement | time |
| local.dqcheck.type | Cohort Fitness |
| local.dqcheck.viz | Bar Graph |
| local.dqcheck.viz | Histogram |
| relation.isCodeOfDQCheck | 929c8dfc-2c8b-4e62-8e1d-0fa06c542832 |
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