Clinical Fact Documentation
| dc.contributor.author | Wieand, Kaleigh |
| dc.contributor.author | Dickinson, Kimberley |
| dc.contributor.other | PEDSnet Data Coordinating Center |
| dc.date.accessioned | 2025-05-28T17:15:35Z |
| dc.date.created | 2024 |
| dc.description.abstract | A network data quality check which computes the proportion of visits with missing fact types. For example, one of the applications of this could be to check the proportion of inpatient visits without an associated condition. This check type can also compute combination of facts such as inpatient visits without an association condition OR medication administration.<br> <br> Results of this check for the current data cycle can be explored on the <a href="https://pedsnet.org/metadata/entities/documentation/9a3dcf2c-b84e-4c9c-9e09-074804956d0f">PEDSnet Data Quality Dashboard</a>. Data quality results for previous data cycles have been archived in the <a href="https://pedsnet.org/metadata/collections/2659da58-f25e-43a8-8926-e6f204a15a64">Person Facts/Records Network Results collection</a>. |
| dc.identifier.uri | https://hdl.handle.net/20.500.14642/1040 |
| dc.identifier.uri | https://doi.org/10.24373/pdsp-484 |
| dc.publisher | PEDSnet |
| dc.relation.uri | https://github.com/PEDSnet/ndq/blob/main/R/patient_facts.R |
| dc.rights | a CC-BY Attribution 4.0 license. |
| dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ |
| dc.title | Clinical Fact Documentation |
| dspace.entity.type | DQCheck |
| local.description.raw | This check produces a raw data output containing 16 columns of data: <br> |Column |Data Type|Definition | |----------------|---------|--------------------------------------------------------------------------------------------| |`total_visits`|numeric|the total number of visits of `visit_type`| |`total_pts`|numeric|the total number of patients with a visit of `visit_type`| |`check_desc`|character|the fact type being evaluated| |`no_fact_visits`|numeric|the number of visits of `visit_type` without the fact type of interest| |`no_fact_pts`|numeric|the number of patients with at least one visit of `visit_type` without the fact type of interest| |`no_fact_visits_prop`|numeric|the proportion of visits of `visit_type` without the fact type of interest| |`no_fact_pts_prop`|numeric|the proportion of patients with at least one visit of `visit_type` without the fact type of interest| |`site` |character|the name of the site being targeted | |`database_version` |character |the database version from which the counts originated | |`check_type` |character |a short string identifier for the module | |`fact_visits`|numeric|the number of visits of `visit_type` with the fact type of interest| |`fact_pts`|numeric|the number of patients with at least one visit of `visit_type` with the fact type of interest| |`fact_visits_prop`|numeric|the proportion of visits of `visit_type` with the fact type of interest| |`fact_pts_prop`|numeric|the proportion of patients with at least one visit of `visit_type` with the fact type of interest| |`visit_type`|character|a string representing the type of visit that is the focus of the analysis| |`check_name` |character |a short string identifier for the check | {.dqcheck-table} <br> |
| local.description.viz | **NOTE: Visualizations are NOT part of the packaged code. This description applies to the visualizations available on the <a href="https://pedsnet.org/metadata/entities/documentation/9a3dcf2c-b84e-4c9c-9e09-074804956d0f">PEDSnet Data Quality Dashboard</a>.** <br><br> Two different plots are used to display the patient and visit level proportions. The patient level proportions are shown on a heatmap, with domain on the Y axis, site on the X axis, and proportion as the fill of the heatmap. The visit level proportions are displayed on a bar graph with the proportion along the X axis and domain on the Y axis (only results for one site can be viewed at a time). Both are facetted by visit type. |
| local.dqcheck.category | Completeness |
| local.dqcheck.clinicalprobe | Clinical Data Distributions |
| local.dqcheck.probe | Information Density |
| local.dqcheck.requirement | omop_or_pcornet |
| local.dqcheck.requirement | check_string |
| local.dqcheck.requirement | visit_tbl |
| local.dqcheck.requirement | visit_type_tbl |
| local.dqcheck.requirement | visit_type_filter |
| local.dqcheck.requirement | pf_tbl |
| local.dqcheck.viz | Heatmap |
| local.dqcheck.viz | Bar Graph |
| relation.isCodeOfDQCheck | 3518c7c7-0f20-491d-bd3d-a2841b66ca2f |
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| relation.isDQResultOfDQCheck | 3373c658-e9a8-4c21-96bc-2fda99d8d35b |
| relation.isDQResultOfDQCheck.latestForDiscovery | 3373c658-e9a8-4c21-96bc-2fda99d8d35b |
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