Patient-Facts: Single Site, Exploratory, Cross-Sectional Analysis
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Abstract
This check assesses how much clinical data is available for patients. It provides a screen shot of clinical data for a single site.
How to Access This Check
- You may access the module’s R package in GitHub.
Or, run in R
install_github('ssdqa/https://github.com/ssdqa/patientfacts')
- Using the provided vignettes on GitHub or help in R, follow parameter input instructions for “Single Site”, “Exploratory Analysis”, “Cross-Sectional Analysis” requirements.
Check Output
Visualization Output
This check outputs a faceted bar graph that summarizes the median number of facts per patient. The domain is shown along the y-axis with the median fact count along the x-axis. The user can customize the facets used such as visit_type, site, age category, etc.
Raw Output
The raw data output of this check produces ten columns of data:
| Column | Data Type | Definition |
|---|---|---|
study |
character | a user provided string label for the study |
site |
character | the name of the site being targeted OR “combined” if multiple sites were provided |
visit_type |
character | string indicating the visit type |
domain |
character | string indicating the domain |
median_all_with0s |
numeric | overall median facts per year of follow up across the cohort, including patients that do not have evidence of the domain |
median_all_without0s |
numeric | overall median facts per year of follow up across the cohort, excluding patients that do not have evidence of the domain |
n_tot |
numeric | total number of patients in the cohort |
n_w_fact |
numeric | number of patients in the cohort with a fact in the domain of interest |
median_site_with0s |
numeric | site-specific median facts per year of follow up across the cohort, including patients that do not have evidence of the domain |
median_site_without0s |
numeric | site-specific median facts per year of follow up across the cohort, excluding patients that do not have evidence of the domain |
Affiliation(s)
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This research was made possible through the generous support of the Patient-Centered Outcomes Research Institute .
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Except where otherwised noted, this item's license is described as a CC-BY Attribution 4.0 License.