Patient-Facts: Single Site, Exploratory, Longitudinal Analysis
| dc.contributor | Patient-Centered Outcomes Research Institute |
| dc.contributor.author | PEDSnet Data Coordinating Center |
| dc.contributor.other | PEDSnet Data Coordinating Center |
| dc.date.accessioned | 2024-07-30T19:37:10Z |
| dc.date.created | 2024-06-05 |
| dc.description.abstract | This check assesses how much clinical data is available for patients accross time. It provides a high level summary of clinical data for a single site. The number of clinical events per year of follow-up for each patient in a cohort is computed and stratified by visit type. |
| dc.identifier.uri | https://hdl.handle.net/20.500.14642/742 |
| dc.identifier.uri | https://doi.org/10.24373/pdsp-420 |
| dc.publisher | PEDSnet |
| dc.relation.uri | https://github.com/ssdqa/patientfacts |
| dc.rights | a CC-BY Attribution 4.0 License. |
| dc.rights.uri | http://creativecommons.org/licenses/by/4.0 |
| dc.subject | Single Site Analysis |
| dc.subject | Exploratory Analysis |
| dc.subject | Longitudinal Analysis |
| dc.subject | Person-Level Analysis |
| dc.title | Patient-Facts: Single Site, Exploratory, Longitudinal Analysis |
| dspace.entity.type | DQCheck |
| local.code.package | # install.packages("devtools") devtools::install_github('ssdqa/https://github.com/ssdqa/patientfacts') |
| local.description.raw | The raw data output of this check produces ten columns of data: <br> | Column | Data Type | Definition | |----------------|-----------|--------------------------------------------------------------------------------------| |`visit_type` | character | string indicating the visit type | |`site` | character | the name of the site being targeted OR "combined" if multiple sites were provided | |`time_start` | date | the start of the time period being examined | |`time_increment` | character | the length of each time period | |`domain` | character | string indicating the domain | |`pts_w_fact` | numeric | the number of patients who have a fact within the time period | |`sum_fact_ct` | numeric | the total number of facts per patient within the time period | |`median_fact_ct` | numeric | the median number of facts per patient within the time period | |`pt_ct_denom` | numeric | the total number of eligible patients from the cohort within the time period | |`pts_w_visit` | numeric | the number of patients with a visit of the type of interest within the time period | {.dqcheck-table} |
| local.description.viz | This check outputs faceted line and dot plots. It shows the median fact count for each domain and how it changes across the user-provided time period. Median fact count is shown on the y-axis, and time (in years) is shown by the x-axis. Each line represents a domain. Hovering over the graph provides additional information about each data point including time_start, domain, and median_fact_ct (the median number of facts for each domain during the specified time period). The user determines the facets used such as site, age category, etc. |
| local.dqcheck.category | Completeness |
| local.dqcheck.clinicalprobe | Clinical Follow-Up |
| local.dqcheck.clinicalprobe | Utilization Patterns |
| local.dqcheck.measurement | Time Series Exploration |
| local.dqcheck.probe | Information Density |
| local.dqcheck.probe | Temporality Consistency Check |
| local.dqcheck.probe | Missing Expected Data |
| local.dqcheck.requirement | cohort |
| local.dqcheck.requirement | study_name |
| local.dqcheck.requirement | patient_level_tbl |
| local.dqcheck.requirement | visit_types |
| local.dqcheck.requirement | omop_or_pcornet |
| local.dqcheck.requirement | multi_or_single_site |
| local.dqcheck.requirement | time |
| local.dqcheck.requirement | time_span |
| local.dqcheck.requirement | time_period |
| local.dqcheck.requirement | p_value |
| local.dqcheck.requirement | age_groups |
| local.dqcheck.requirement | anomaly_or_exploratory |
| local.dqcheck.requirement | domain_tbl |
| local.dqcheck.requirement | visit_type_table |
| local.dqcheck.type | Cohort Fitness |
| local.dqcheck.viz | Line Graph |
| relation.isCodeOfDQCheck | 929c8dfc-2c8b-4e62-8e1d-0fa06c542832 |
| relation.isCodeOfDQCheck.latestForDiscovery | 929c8dfc-2c8b-4e62-8e1d-0fa06c542832 |
| relation.isDQResultOfDQCheck | ed772932-bc3c-48c7-a6d9-b6ed09bd428b |
| relation.isDQResultOfDQCheck.latestForDiscovery | ed772932-bc3c-48c7-a6d9-b6ed09bd428b |
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