Observation Derivation RECOVER


ODR

Date Last Modified

2022

Developers

Razzaghi, Hanieh
Dickinson, Kimberley
Allen, Andrea
Bailey, Charles
Hirabayashi, Kathryn
Lorman, Vitaly

Tags


Files

2 Downloads↓
observation_derivation_recover.zip (136.8 KB)
↓
ODR_Table_Metadata.pdf (185.57 KB)
↓

Publisher

PEDSnet

About

Code to pull PASC/COVID-relevant observations from the CDM and metadata to describe the resulting tables.

Access Package

Provenance

Code developed to extract COVID patients out of the PEDSnet CDM observation table for the the Researching COVID to Enhance Recovery (RECOVER) Post-Acute Sequelae of SARS-CoV-2 (PASC) Electronic Health Record (EHR) Cohort Study. RECOVER was a was a long-term NIH-funded project focused on analyzing the COVID-19 outbreak, especially the long term health impacts of the pandemic.

Developer Affiliation(s)

PEDSnet Data Coordinating Center

Description

Downloadable content includes a comprehensive outline of ODR table metadata, executable R functions for cohort creation, necessary codesets to successfully create the cohorts, and reporting summary rmd files.

Observation Derivation RECOVER (ODR) is a computed table derived from PEDSnet CDM tables. The code, found in observation_derivation_recover pulls in COVID-related rows from the CDM and implements the PASC computable phenotype.

Clinical Subject Headings

Related Code

Related Concept Sets

Thumbnail Image
Paxlovid, Drug Exposure
Created:2022-10-10Affiliation:PEDSnet Data Coordinating Center
The concept set was intended to identify all patients with a drug_exposure record indicating a Paxlovid exposure (nirmatrelvir/ritonavir).
Thumbnail Image
Post-Acute Sequelae of SARS-CoV2, Diagnosed
Created:2022-05-30Affiliation:PEDSnet Data Coordinating Center
This concept set is inteded to identify patients with a diagnosis of post-acute sequelae of SARS-CoV2.
Thumbnail Image
Remdesivir, Drug Exposure
Created:2022-12-29Affiliation:PEDSnet Data Coordinating Center
Concept set intended to identify patients with an exposure to the medication Remdesivir. Used to identify a broad inclusion cohort for COVID-19 analyses in the RECOVER initiative.
Thumbnail Image
Multisystem Inflammatory Syndrome, Diagnosed
Created:2022-05-26Affiliation:PEDSnet Data Coordinating Center
This concept set is inteded to identify patients with a diagnosis of multisystem inflammatory syndrome.
Thumbnail Image
COVID-19, Diagnosed
Created:2022-05-30Affiliation:PEDSnet Data Coordinating Center
This concept set is intended to identify patients with a COVID-19 diagnosis.

Related Studies

Thumbnail Image
The Researching COVID to Enhance Recovery (RECOVER) Post-Acute Sequelae of SARS-CoV-2 (PASC) Electronic Health Record (EHR) Cohort Study
Affiliation:Children's Hospital of Philadelphia
Study to understand, prevent, and treat post-acute sequelae of SARS-CoV-2 (PASC), including Long COVID.
#### [View the RECOVER initiative website here.](https://recovercovid.org/)

Related Phenotypes

Related Resources

Related Data Quality Check

Creative Commons license

a CC-BY Attribution 4.0 license.
Except where otherwised noted, this item's license is described as a CC-BY Attribution 4.0 license.

This license applies to the metadata and documentation of this digital package. The source code and software components may be governed by different licensing terms. Please refer to the GitHub repository link for specific software licensing information.

Cite this Code

Razzaghi, H., Dickinson, K., Allen, A., Bailey, C., Hirabayashi, K., & Lorman, V. (2021, December). Observation Derivation RECOVER. [Code]. PEDSpace Knowledge Bank. https://hdl.handle.net/20.500.14642/1643